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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5331819_5354366_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5331819 - 5354366
Intron Length:
22548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTCATTT
Flanking Amino Acid:
ALHNIKTLPGMHHPIQMKPA
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
100
1.24
0.5
100
0
Major PPT
89.4
0.89
0.7
88.9
28.2
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
50.8
0.1
1.8
70.88
41.3

Associated Gene:

Gene:
CELF2
Ensembl Gene ID:
ENSAPLG00000010064
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031223
5188947 - 5428458
239512
ENSAPLT00000030189
5188947 - 5428090
239144
ENSAPLT00000028650
5175313 - 5426764
251452
ENSAPLT00000010552
5188947 - 5426764
237818
ENSAPLT00000034517
5061983 - 5428458
366476