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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53326870_53326965_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53326870 - 53326965
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGTTT
5'SS Class:
major
3'SS Sequence:
CTTGCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TCTTTAAGACAG
Flanking Amino Acid:
VPVITTLLRGGARVDALDRA
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
79.5
36.8
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
79.9
0.67
0.8
73.5
31.5
Minor 5ss
48.2
-0.2
3.2
73.2
43.7
Minor BPS
36.4
-1.1
2
43.23
41.7

Associated Gene:

Gene:
ANKRD54
Ensembl Gene ID:
ENSAPLG00000015350
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017616
53324636 - 53329194
4559