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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53326870_53327390_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53326870 - 53327390
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TCTTTAAGACAG
Flanking Amino Acid:
DGLGNTPLHLGARVDALDRA
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
79.9
0.67
0.8
73.5
31.5
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
36.4
-1.1
2
43.23
41.7

Associated Gene:

Gene:
ANKRD54
Ensembl Gene ID:
ENSAPLG00000015350
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015994
53325780 - 53329194
3415