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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53327014_53327390_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53327014 - 53327390
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAG
U12 Branch Point Sequence:
TACCTCTGAGCT
Flanking Amino Acid:
DGLGNTPLHLAACTNHVPVI
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
55.1
0.13
1.5
54.7
43.1
Major PPT
81.2
0.7
0.7
73.5
31.5
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
49.5
0.05
1.7
67.44
42.9

Associated Gene:

Gene:
ANKRD54
Ensembl Gene ID:
ENSAPLG00000015350
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017616
53324636 - 53329194
4559