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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53328900_53328989_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53328900 - 53328989
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCAAT
U12 Branch Point Sequence:
CTTCTCTCCACA
Flanking Amino Acid:
RLGPTGKESHALKRLREAAN
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
48.8
-0
1.3
56.3
37.4
Major PPT
81.3
0.71
0.7
76
26.2
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
48.6
-0.1
2
64.43
42.1

Associated Gene:

Gene:
ANKRD54
Ensembl Gene ID:
ENSAPLG00000015350
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017616
53324636 - 53329194
4559