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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53341572_53345256_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53341572 - 53345256
Intron Length:
3685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTCTCGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CTCTGTTTCACA
Flanking Amino Acid:
AILHRHRPDLLDFDSLSKEN
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
69.6
32.4
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
86.8
0.83
0.8
84.7
30.2
Minor 5ss
37
-1.5
2.9
49.9
46.4
Minor BPS
48.2
-0.1
2.2
61.93
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030213
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045635
53340985 - 53355337
14353