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Intron Name: Anas_platyrhynchos_platyrhynchos_1_53346461_53347687_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53346461 - 53347687

Intron Length:

1227

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGTCTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCCTGAT

U12 Branch Point Sequence:

CTCGCCTGATCC

Flanking Amino Acid:

YYNHFNNPSQARVPPPMKRP

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

71.2

34.2

Major BPS

0.27

1.3

53.3

44.2

Major PPT

81.5

0.71

0.8

72.9

37.4

Minor 5ss

27.1

-2.6

3.2

41.6

Minor BPS

48.4

-0.1

1.9

58.6

46.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030213

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045635

53340985 - 53355337

14353