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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53348350_53350130_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53348350 - 53350130
Intron Length:
1781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
GTACTCCCACCT
Flanking Amino Acid:
EGKLYHRQCFRCKECSSTLL
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
1
71.4
40
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
79.1
0.66
0.9
76.5
32
Minor 5ss
32
-2.1
3.3
44
43.8
Minor BPS
42.2
-0.5
2
60.17
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030213
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045635
53340985 - 53355337
14353