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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53351000_53351075_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53351000 - 53351075
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACGTCCT
5'SS Class:
major
3'SS Sequence:
TCTCTTCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCGCTAC
U12 Branch Point Sequence:
CTCGCGCTACCT
Flanking Amino Acid:
KPRGRPCSSDRAGAAARAKD
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
66.8
44.4
Major BPS
37.6
-0.7
1.3
23.8
33.9
Major PPT
83.7
0.76
0.7
76.5
32.2
Minor 5ss
36.3
-1.6
3.2
51.8
44.5
Minor BPS
40.1
-0.6
2.5
59.61
49.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030213
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045635
53340985 - 53355337
14353