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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53357180_53357809_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53357180 - 53357809
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTATGTTGT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTGTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTCTTTTTCACA
Flanking Amino Acid:
EEIEIDRFEELMNEVRERQE
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.3
71.4
41.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.9
0.74
0.9
84.1
30.9
Minor 5ss
49.4
-0
2.4
65.5
39.4
Minor BPS
55.7
0.17
1.8
65.59
41.9

Associated Gene:

Gene:
C22orf23
Ensembl Gene ID:
ENSAPLG00000015251
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015895
53356668 - 53447426
90759