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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53358980_53359150_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53358980 - 53359150
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
CGATATTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACACAAAA
Flanking Amino Acid:
YSPKTRELLRAMMEESKLTS
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.9
0.56
1
65.3
45
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
49.1
-0
2.1
71.71
39.4

Associated Gene:

Gene:
C22orf23
Ensembl Gene ID:
ENSAPLG00000015251
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015895
53356668 - 53447426
90759