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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53360236_53360312_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53360236 - 53360312
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTGAG
U12 Branch Point Sequence:
CGAGCCATAGCG
Flanking Amino Acid:
GLEDLENAEEEGQENVEILP
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
75.7
34.4
Major BPS
46.9
-0.1
1.7
45
47.8
Major PPT
80
0.68
0.8
72.9
37.4
Minor 5ss
30.4
-2.2
3.5
42.4
45.1
Minor BPS
43.8
-0.6
2
46.01
45.9

Associated Gene:

Gene:
POLR2F
Ensembl Gene ID:
ENSAPLG00000015235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015885
53358867 - 53363918
5052