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Intron Name: Anas_platyrhynchos_platyrhynchos_1_53360444_53362090_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53360444 - 53362090

Intron Length:

1647

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTGAGTATT

5'SS Class:

major

3'SS Sequence:

TGTTTTGTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAA

U12 Branch Point Sequence:

GTTCTCTCAAAT

Flanking Amino Acid:

RVLGTRALQIAMCAPVMVEL

Intron Amino Acid Position:

238

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.2

0.45

1.3

77.8

38.7

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

84.7

0.78

0.9

76.9

42.1

Minor 5ss

37.2

-1.5

2.9

46.9

41.8

Minor BPS

57.9

0.33

1.7

76.04

39.8

Associated Gene:

Gene:

POLR2F

Ensembl Gene ID:

ENSAPLG00000015235

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015885

53358867 - 53363918

5052