About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53362163_53363726_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53362163 - 53363726
Intron Length:
1564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
GTCCTTCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACC
Flanking Amino Acid:
DPLLIAMKELKARKIPIIIR
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
72.6
37.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.4
0.64
0.8
69.5
36.8
Minor 5ss
37.2
-1.4
2.9
46.5
35.3
Minor BPS
61.4
0.34
1.7
74.92
35.8

Associated Gene:

Gene:
POLR2F
Ensembl Gene ID:
ENSAPLG00000015235
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015885
53358867 - 53363918
5052