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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53369559_53369958_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53369559 - 53369958
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCCTCCTCAAAA
Flanking Amino Acid:
MSDGHPEHSSGQSHGPPTPP
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.9
0.76
0.8
77.6
30.7
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
61.4
0.35
1.7
68.84
43.3

Associated Gene:

Gene:
SOX10
Ensembl Gene ID:
ENSAPLG00000015217
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015869
53368843 - 53375903
7061