Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53402545_53402668_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53402545 - 53402668

Intron Length:

124

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGGT

5'SS Class:

strong_major

3'SS Sequence:

GTTCTGCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGGAA

U12 Branch Point Sequence:

CAGTTTGGAATT

Flanking Amino Acid:

EVAKMIQMVKGEVTIHYNKL

Intron Amino Acid Position:

115

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.8

35.2

Major BPS

62.2

0.3

1.4

63.4

44.3

Major PPT

0.61

0.9

69.9

36.6

Minor 5ss

26.7

-2.7

3.3

38.5

46.6

Minor BPS

43.6

-0.4

56.53

Associated Gene:

Gene:

PICK1

Ensembl Gene ID:

ENSAPLG00000015117

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037223

53400242 - 53410443

10202

ENSAPLT00000015805

53400106 - 53410443

10338