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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53404708_53405036_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53404708 - 53405036
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAAGT
5'SS Class:
major
3'SS Sequence:
TACCCTTGTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
AFFELSQTHRAFGDVFSVIG
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
68.7
0.42
0.9
61.5
39.7
Minor 5ss
40.7
-1
3
58.6
45.5
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
PICK1
Ensembl Gene ID:
ENSAPLG00000015117
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015805
53400106 - 53410443
10338
ENSAPLT00000037223
53400242 - 53410443
10202