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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53415644_53415993_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
53415644 - 53415993
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CACCCCCACGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TGGCTCTCACCC
Flanking Amino Acid:
ELYLTAGVLTGLGMALNFQP
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
56.9
0.16
0.8
50.7
26.2
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
46.9
-0.2
1.8
56.45
41.9

Associated Gene:

Gene:
SLC16A8
Ensembl Gene ID:
ENSAPLG00000015097
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015744
53412113 - 53416638
4526