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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53423083_53423603_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53423083 - 53423603
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
GATTACTTGATG
Flanking Amino Acid:
VSDQPPELFPRGTNPFATVK
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
68.7
38.1
Major BPS
75
0.62
1
65.3
41.5
Major PPT
86
0.81
0.7
77.5
31.2
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
58.7
0.13
1.6
61.33
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033934
53422680 - 53436540
13861