About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53425923_53426777_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53425923 - 53426777
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTACGTGAC
5'SS Class:
major
3'SS Sequence:
TTCCGTGGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
GCTCATTTATCT
Flanking Amino Acid:
WLYGKLEGSSTCGWFPEAYV
Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.3
66.9
39.2
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
60.6
0.24
1
53.3
41.5
Minor 5ss
33.3
-1.9
3.4
41.9
38.7
Minor BPS
49.4
0.04
1.8
67.06
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041908
53424256 - 53435863
11608
ENSAPLT00000037539
53424256 - 53436540
12285
ENSAPLT00000033934
53422680 - 53436540
13861
ENSAPLT00000023638
53424256 - 53434098
9843