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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53427610_53427791_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53427610 - 53427791
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
TTCCTTCCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
TTTCCTTCCAGC
Flanking Amino Acid:
GRSTPTHLEMLQKPLGDFTS
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.6
40
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
77.6
0.62
0.8
74.3
29.3
Minor 5ss
27.3
-2.6
3
30.8
36.9
Minor BPS
45.9
-0.3
2.2
63.67
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037539
53424256 - 53436540
12285
ENSAPLT00000033934
53422680 - 53436540
13861
ENSAPLT00000023638
53424256 - 53434098
9843
ENSAPLT00000041908
53424256 - 53435863
11608