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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53427945_53428042_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53427945 - 53428042
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGGCCC
5'SS Class:
major
3'SS Sequence:
TCTCTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATCCAC
U12 Branch Point Sequence:
TTCTCTTTTATC
Flanking Amino Acid:
YNTLLQFYSRAQGMIQNKAP
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.2
54.6
41
Major BPS
48.9
-0
1.2
59.8
36.5
Major PPT
84.5
0.78
0.8
85
28.1
Minor 5ss
30.5
-2.2
3.4
34.3
41.5
Minor BPS
65.6
0.47
1.6
73.89
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037539
53424256 - 53436540
12285
ENSAPLT00000033934
53422680 - 53436540
13861
ENSAPLT00000023638
53424256 - 53434098
9843
ENSAPLT00000041908
53424256 - 53435863
11608