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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53428484_53428613_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53428484 - 53428613
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
GGTTTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCATAT
U12 Branch Point Sequence:
TATTCTTCCACT
Flanking Amino Acid:
EGKQLLRKNQELQTRLSDEI
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.9
72.2
42.2
Major BPS
56.4
0.16
1.3
55
42.7
Major PPT
69.5
0.44
1
62.2
39.8
Minor 5ss
19.4
-3.5
3.9
28.4
43.8
Minor BPS
59.2
0.37
2
81.34
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041908
53424256 - 53435863
11608
ENSAPLT00000037539
53424256 - 53436540
12285
ENSAPLT00000033934
53422680 - 53436540
13861
ENSAPLT00000023638
53424256 - 53434098
9843