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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53429393_53429560_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53429393 - 53429560
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGGGCG
5'SS Class:
major
3'SS Sequence:
TCCCTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
AGAGCCTGATCC
Flanking Amino Acid:
LAEEAAATAAAIEALKKAHR
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.2
55.6
40.8
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
79.1
0.66
0.7
73
25.2
Minor 5ss
27.7
-2.6
3.6
29.5
43.4
Minor BPS
47.5
-0.2
1.8
55.68
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023638
53424256 - 53434098
9843
ENSAPLT00000041908
53424256 - 53435863
11608
ENSAPLT00000037539
53424256 - 53436540
12285