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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53429709_53430449_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
53429709 - 53430449
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
CCCGGCCTGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
TTGTCCTTTCCC
Flanking Amino Acid:
SHVPRGYISQEACERSLAEM
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
75.3
40.8
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
59.3
0.21
1
53
36.7
Minor 5ss
40.5
-1.1
3.1
57.5
46.7
Minor BPS
46.4
-0.3
3.6
74.54
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037539
53424256 - 53436540
12285
ENSAPLT00000033934
53422680 - 53436540
13861
ENSAPLT00000023638
53424256 - 53434098
9843
ENSAPLT00000041908
53424256 - 53435863
11608