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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53430549_53430919_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53430549 - 53430919
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTGGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAGCAC
U12 Branch Point Sequence:
GGCTCAGCACCT
Flanking Amino Acid:
GDLNEALRKEVQSLRAQLES
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
46.4
-0.2
1.4
53.6
41.6
Major PPT
64.9
0.33
1
59.2
35.7
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
37.6
-0.8
2.4
54.88
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041908
53424256 - 53435863
11608
ENSAPLT00000037539
53424256 - 53436540
12285
ENSAPLT00000033934
53422680 - 53436540
13861
ENSAPLT00000023638
53424256 - 53434098
9843