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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53431491_53431788_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53431491 - 53431788
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
TCTTCCCTCACG
Flanking Amino Acid:
VRPVSAPDVTKLSDCNKENA
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.3
32.6
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
75.7
0.58
0.9
65.6
40.4
Minor 5ss
34.8
-1.7
3.5
49.1
41
Minor BPS
55.5
0.03
2.2
67.91
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023638
53424256 - 53434098
9843
ENSAPLT00000041908
53424256 - 53435863
11608
ENSAPLT00000037539
53424256 - 53436540
12285
ENSAPLT00000033934
53422680 - 53436540
13861