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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53432890_53433176_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
53432890 - 53433176
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GGCCCGCTGGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCCC
U12 Branch Point Sequence:
TTTCCCCTCCCT
Flanking Amino Acid:
WMSILDEPGEWKKHWFVLTD
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
35.6
-0.9
4.2
77.4
37.4
Major PPT
56.3
0.14
1.1
49.6
39.3
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
40.4
-0.6
3.7
78.26
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037539
53424256 - 53436540
12285
ENSAPLT00000033934
53422680 - 53436540
13861
ENSAPLT00000023638
53424256 - 53434098
9843