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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53433234_53435857_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53433234 - 53435857
Intron Length:
2624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
CTCTCTCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTAAC
U12 Branch Point Sequence:
CACACAGTAACC
Flanking Amino Acid:
MTPDLLNFKKGW
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
62.7
43.4
Major BPS
54.4
0.11
1.2
57
36.4
Major PPT
81.6
0.71
0.7
73.1
31.8
Minor 5ss
29.6
-2.3
2.7
34.6
40.9
Minor BPS
44.2
-0.4
2.2
53.28
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041908
53424256 - 53435863
11608
ENSAPLT00000037539
53424256 - 53436540
12285
ENSAPLT00000033934
53422680 - 53436540
13861