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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53447366_53448407_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53447366 - 53448407
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTTATACCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTATACCC
Flanking Amino Acid:
NSLCADCGKPDPDWASSTLG
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.8
0.62
0.8
74.8
34.9
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
49.7
-0
1.9
66.02
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015707
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016396
53447278 - 53453575
6298