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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53448539_53449409_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53448539 - 53449409
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCTAACTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
CTCTGTCTAACT
Flanking Amino Acid:
MDHWDDAQVQFLAKHGNAVT
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
76.8
0.6
0.9
69.8
36.1
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
49.7
0.06
2.1
71.75
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015707
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023283
53447909 - 53452989
5081
ENSAPLT00000020753
53447909 - 53453575
5667
ENSAPLT00000016396
53447278 - 53453575
6298