Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53450390_53451137_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53450390 - 53451137

Intron Length:

748

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGAGCATG

5'SS Class:

major

3'SS Sequence:

TTTCTGTTCTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCATCAA

U12 Branch Point Sequence:

GCATCATCAATG

Flanking Amino Acid:

GCLKYFTKQDSKEPKISVKI

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.1

70.8

Major BPS

66.5

0.41

1.1

68.2

37.5

Major PPT

85.6

0.8

84.1

30.8

Minor 5ss

-1.1

53.3

43.9

Minor BPS

47.6

-0.3

1.9

50.73

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015707

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023283

53447909 - 53452989

5081

ENSAPLT00000020753

53447909 - 53453575

5667

ENSAPLT00000016396

53447278 - 53453575

6298