Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53451755_53452092_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53451755 - 53452092

Intron Length:

338

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGCAG

5'SS Class:

strong_major

3'SS Sequence:

ACTTTTTTGCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

TTACTCTCACTT

Flanking Amino Acid:

VAFPIASDNEIKSRLTRNFL

Intron Amino Acid Position:

247

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

69.6

42.7

Major BPS

72.7

0.56

30.1

Major PPT

78.5

0.64

73.1

41.5

Minor 5ss

30.1

-2.3

3.2

37.6

47.1

Minor BPS

49.4

0.03

1.8

70.16

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015707

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020753

53447909 - 53453575

5667

ENSAPLT00000016396

53447278 - 53453575

6298

ENSAPLT00000023283

53447909 - 53452989

5081