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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53453460_53453546_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53453460 - 53453546
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCGCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
ATTGCCCTAATG
Flanking Amino Acid:
NQAMTPQEYAIEAYFKFKS*
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
78.3
0.64
0.8
72
32.7
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
58.3
0.12
1.9
66.44
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015707
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020753
53447909 - 53453575
5667