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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53460274_53460587_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53460274 - 53460587
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTTCTCTGACTT
Flanking Amino Acid:
FPFQKGAPAEVTFSINPSDV
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
74.2
36.1
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
88.3
0.86
0.7
83.5
24.7
Minor 5ss
29.2
-2.4
3.1
40
45.5
Minor BPS
56.1
0.27
1.7
77.82
38.8

Associated Gene:

Gene:
LGALS1
Ensembl Gene ID:
ENSAPLG00000015749
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016427
53460130 - 53462963
2834