About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53460760_53461742_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53460760 - 53461742
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTGAC
U12 Branch Point Sequence:
TCTCCTTTCCCT
Flanking Amino Acid:
VKGTIPPNAKSFVMNLGKDA
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
48.3
-0.1
1.3
40.8
41.4
Major PPT
83.1
0.74
0.7
77.2
24.8
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
42
-0.5
3.6
72.56
44.8

Associated Gene:

Gene:
LGALS1
Ensembl Gene ID:
ENSAPLG00000015749
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016427
53460130 - 53462963
2834