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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53461823_53462954_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53461823 - 53462954
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
TCTTGTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
CTGACCTAACCT
Flanking Amino Acid:
MSCGPVCTNLGLK
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
62
38.8
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
82.3
0.73
0.8
80.6
31.5
Minor 5ss
28.5
-2.5
3
28
36.3
Minor BPS
48.9
-0
2
68.01
48.5

Associated Gene:

Gene:
LGALS1
Ensembl Gene ID:
ENSAPLG00000015749
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016427
53460130 - 53462963
2834