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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53476067_53476150_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53476067 - 53476150
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCATGAC
U12 Branch Point Sequence:
AGCACCATGACC
Flanking Amino Acid:
VPPAHDSIRKAKRPAPARPT
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
70.4
35.4
Major BPS
49.9
-0
1.2
43
37.8
Major PPT
91.6
0.94
0.6
84.4
30.5
Minor 5ss
26.8
-2.7
2.8
31.2
42.4
Minor BPS
49.8
-0
1.7
58.97
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015783
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016460
53475391 - 53481433
6043