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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53476252_53476356_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53476252 - 53476356
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
AGAGCCTGATTG
Flanking Amino Acid:
ASSPALPDEEGTRDPEVSTQ
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
77.4
0.62
0.7
69.1
31.5
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
44.2
-0.5
1.8
44.4
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015783
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016460
53475391 - 53481433
6043