Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53476487_53476585_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53476487 - 53476585

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGCTT

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCCGCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAAGCAT

U12 Branch Point Sequence:

ATTTCCTGGCCT

Flanking Amino Acid:

IQNADTLFPGDVDFNVSGMF

Intron Amino Acid Position:

468

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

73.4

43.3

Major BPS

47.3

-0.1

1.4

55.4

40.3

Major PPT

69.6

0.44

0.9

61.4

34.9

Minor 5ss

35.3

-1.7

3.8

55.3

48.9

Minor BPS

46.6

-0.1

3.6

82.42

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015783

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016460

53475391 - 53481433

6043