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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53476941_53477048_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53476941 - 53477048
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTTTTGT
5'SS Class:
major
3'SS Sequence:
TTTGACCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TCTCCTTTGACC
Flanking Amino Acid:
RLPQDSYNNLRYLIKFLAKL
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
69.4
37.5
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
73.2
0.52
0.9
65.9
35.7
Minor 5ss
42.6
-0.8
2.8
58.8
45.7
Minor BPS
71.5
0.66
1.2
75.04
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015783
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016460
53475391 - 53481433
6043