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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53478325_53478429_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53478325 - 53478429
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTCAC
U12 Branch Point Sequence:
TGTCCCTTCCCA
Flanking Amino Acid:
EVKRKVEQCKDEYMADLYHF
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
74.2
36.1
Major BPS
51
0.02
1.3
54.8
42.1
Major PPT
77.6
0.62
0.8
69.1
36.9
Minor 5ss
28.3
-2.5
2.7
32
42.1
Minor BPS
43.3
-0.5
3.6
69.6
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015783
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016460
53475391 - 53481433
6043