Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53478760_53478833_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53478760 - 53478833

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGCCCCG

5'SS Class:

major

3'SS Sequence:

CCCTCTCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

TGCCCCTCACCC

Flanking Amino Acid:

VLQPLNKLSEEELPIILKRK

Intron Amino Acid Position:

134

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.6

0.3

1.3

48.1

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

76.3

0.59

0.8

32.1

Minor 5ss

42.3

-0.8

3.2

47.3

Minor BPS

49.3

-0

1.9

61.1

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015783

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016460

53475391 - 53481433

6043