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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53479347_53479552_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53479347 - 53479552
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCACCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAG
U12 Branch Point Sequence:
CCTTTCCCACCC
Flanking Amino Acid:
TELLTEDLLQIEQRIEPAKR
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
69.5
42.7
Major BPS
62.2
0.3
1.5
71.4
36.6
Major PPT
73.4
0.53
0.8
70.2
29.5
Minor 5ss
27
-2.6
3.3
38.6
46.5
Minor BPS
43.4
-0.5
2.1
54.29
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015783
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016460
53475391 - 53481433
6043