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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53479596_53480959_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53479596 - 53480959
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTCTCCTTCTCC
Flanking Amino Acid:
QQLSHPNATSRAQEATELLT
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
72.7
38.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
82.6
0.73
0.7
76.9
25.1
Minor 5ss
33
-1.9
3.1
41.9
44.5
Minor BPS
46
-0.3
3.6
73.85
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015783
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016460
53475391 - 53481433
6043