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Intron Name: Anas_platyrhynchos_platyrhynchos_1_53483962_53484098_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53483962 - 53484098

Intron Length:

137

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGCAG

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGGGAT

U12 Branch Point Sequence:

GGACACGGGATG

Flanking Amino Acid:

NIVFQSAVPKVMKVKLQPPS

Intron Amino Acid Position:

573

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

69.6

42.7

Major BPS

45.5

-0.2

1.6

42.8

49.4

Major PPT

76.9

0.6

0.7

68.7

31.7

Minor 5ss

30.1

-2.3

3.2

37.6

47.1

Minor BPS

34.4

-1.3

32.15

33.3

Associated Gene:

Gene:

GGA1

Ensembl Gene ID:

ENSAPLG00000015801

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030479

53482402 - 53490050

7649

ENSAPLT00000016484

53483646 - 53490050

6405