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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53484738_53484844_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53484738 - 53484844
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
TTTCGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CACTCCTCACCC
Flanking Amino Acid:
SLPPESQQVRWEKQPPPRLT
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.2
0.59
0.8
70
30.9
Minor 5ss
33.5
-1.9
2.8
36.6
41.8
Minor BPS
49.9
-0
1.9
59.47
45.5

Associated Gene:

Gene:
GGA1
Ensembl Gene ID:
ENSAPLG00000015801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030479
53482402 - 53490050
7649
ENSAPLT00000016484
53483646 - 53490050
6405