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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53485742_53486043_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53485742 - 53486043
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TGCCTCTCACCT
Flanking Amino Acid:
NGEVTAGPLRGSTSALLDLS
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
72.7
0.56
1
75
30.1
Major PPT
93.2
0.97
0.6
89.1
19.8
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
48.2
-0
1.8
65.97
44.5

Associated Gene:

Gene:
GGA1
Ensembl Gene ID:
ENSAPLG00000015801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030479
53482402 - 53490050
7649
ENSAPLT00000016484
53483646 - 53490050
6405