About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53488151_53488207_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
53488151 - 53488207
Intron Length:
57

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAAGTCC
5'SS Class:
major
3'SS Sequence:
GCTGCCTCACGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
GCTGCCTCACGA
Flanking Amino Acid:
KYLGSRTPEKVKILEAYQML
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1
59.7
33.7
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
46.9
-0.1
1.7
47.7
40.4
Minor 5ss
33.6
-1.9
3.3
41.9
39.3
Minor BPS
43
-0.5
2.1
51.68
46.1

Associated Gene:

Gene:
GGA1
Ensembl Gene ID:
ENSAPLG00000015801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016484
53483646 - 53490050
6405