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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53501324_53501714_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53501324 - 53501714
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGGGCT
5'SS Class:
major
3'SS Sequence:
TCCCTCATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
CCTTCCCCAACA
Flanking Amino Acid:
MSEKFEIFNLDM
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
63.8
39.6
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
69.1
0.43
1
64.7
35.2
Minor 5ss
34.8
-1.7
3.7
57.8
46.4
Minor BPS
55
0.15
2
68.3
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015937
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027893
53501318 - 53503046
1729